Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKCVLS
2RGE Chain:A ((1-166))
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG--------DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2RGE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105338 for 1287 contacts (-81.8/contact) +
2D Compatibility (PS) -17370 + (NN) -5591 + (LL) 1332
1D Compatibility (HY) -22400 + (ID) 7900
Total energy: -157267.0 ( -122.20 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_2RGE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RGE-query.scw
PDB file :
Tito_Scwrl_2RGE.pdb
: