Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVER-GYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNS--------FS-GVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPY---GLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN
4HL2 Chain:A ((19-242))
---------------------FGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKV--FYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKL------------
General information:
TITO was launched using:
RESULT:
Template:
4HL2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70094 for 1895 contacts (-37.0/contact) +
2D Compatibility (PS) -23421 + (NN) -12374 + (LL) 2528
1D Compatibility (HY) -12000 + (ID) 3650
Total energy: -119011.0 ( -62.80 by residue)
QMean score : 0.662
(partial model without unconserved sides chains):
PDB file :
Tito_4HL2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HL2-query.scw
PDB file :
Tito_Scwrl_4HL2.pdb
: