Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVV-WGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGT---GLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
4IN9 Chain:A ((4-165))
-----QGSKWNKTTLKYYIYN----LTTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNTGILAHAFYPPPAGGNYAGHLHFDDDENWSIN-GSGIDLITVAAHEIGHLLGIEHSNVSSALMYPYYTGIKR---QLDNDDCLAVWDLYGYP------
General information:
TITO was launched using:
RESULT:
Template:
4IN9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62904 for 1165 contacts (-54.0/contact) +
2D Compatibility (PS) -17220 + (NN) -14609 + (LL) 636
1D Compatibility (HY) -12000 + (ID) 2900
Total energy: -108997.0 ( -93.56 by residue)
QMean score : 0.735
(partial model without unconserved sides chains):
PDB file :
Tito_4IN9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IN9-query.scw
PDB file :
Tito_Scwrl_4IN9.pdb
: