Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
4JLM Chain:A ((39-280))
------------------TRIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSN---------ELTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
4JLM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115992 for 1831 contacts (-63.3/contact) +
2D Compatibility (PS) -24334 + (NN) -5223 + (LL) 992
1D Compatibility (HY) -33600 + (ID) 11450
Total energy: -189607.0 ( -103.55 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_4JLM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLM-query.scw
PDB file :
Tito_Scwrl_4JLM.pdb
: