Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALEQNQSTDYYY----EENEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFVIGLAGNSMVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVH--GWVLGKIMCKITSALYTLNFVSGMQFLACISIDRYVAVTK-VPSQSGVGKPCWIICFCVWMAAILLSIPQLV----FYTVNDNARCIP-IFPRYLGTSMKALIQMLEICIGFVVPFLIMGVCYFITARTLMKMPNIKISRPLKVLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKRMDIAIQVTESIALFHSCLNPILYVFMGASFKNYVMKVAKKYGSWRRQRQSVEEFPFDSEGPTEPTSTFSI |
| 1F88 Chain:A ((1-348)) | --MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYL------AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVH-FIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV----YNPVIYIMMNKQFRNCMVTTLCC------GKNPSTTVSKTETSQVAPA----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -261879 for 2681 contacts (-97.7/contact) +
2D Compatibility (PS) -32981 + (NN) -6991 + (LL) 1520
1D Compatibility (HY) -24400 + (ID) 2900
Total energy: -327631.0 ( -122.20 by residue)
QMean score : 0.323
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