Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQFSGEKISGQRDLQKSKMRFTFTSRCLALFLLLNHPTPILPAFSNQTYPTIEPKPFLYVVGRKKMMDAQYKCYDRMQQLPAYQGEGPYCNRTWDGWLCWDDTPAGVLSYQFCPDYFPDFDPSEKVTKYCDEKGVWFKHPENNRTWSNYTMCNAFTPEKLKNAYVLYYLAIVGHSLSIFTLVISLGIFVFFRKLTTIFPLNWKYRKALSLGCQRVTLHKNMFLTYILNSMIIIIHLVEVVPNGELVRRDPVSCKILHFFHQYMMACNYFWMLCEGIYLHTLIVVAVFTEK--QRLRWYYLLGWGFPLVPTTIHAITRAVYF---NDNCWLSV---ETH----------LLYIIHGPVMAALVVNFFFLLNIVRVLVTKM-RETHEAESHMYLKAVKATMILVPLLGIQFVVFPWRPS----NKM-----LGKIYDYVMHSLIHFQGFFVATIYCFCNNEVQTTVKRQWAQFKIQWNQRWGRRPSNRSARAAAAAAEAGDIPIYICHQEPRNEPANNQGEESAEIIPLNIIEQESSA |
| 2KS9 Chain:A ((37-324)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAYTVIVVTSVVGNVVVMWIILAHK----------------RMRTVTNYFLVNLAFAEASMAAFNTVVNFTYA-VHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEMKSTRYLQTQGSVYKVSRLETTISTVVGA------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2KS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -244221 for 1942 contacts (-125.8/contact) +
2D Compatibility (PS) -25717 + (NN) 2576 + (LL) 12208
1D Compatibility (HY) -12000 + (ID) 1450
Total energy: -268604.0 ( -138.31 by residue)
QMean score : 0.192
|
|
|