Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTSRSVCEKMTMTTENPNQTVVSHFFLEGLRYTAKHSSLFFLLFLLIYSITVAGNLLILLTVGSDSHLSLPMYHFLGHLSFLDACLSTVTVPKVMAGLLTLDGKVISFEGCAVQLYCF-------HFLASTECFLYTVMAYDRYLAICQPLHYPVAMNRRMCAEMAGITWAIGATHAAIHTSLTFRLLYCGPCHIAYF------------FCDIPPVLKLACTDTTINELVMLASIGIVAAGCLI--LIVISYIFIVAAVLRIR--TAQGRQRAFSPC---TAQLTGVLLYYVPPVCIYLQPRSSEA-GAGAPAVFYTIVTPMLNPFI---YTLRNKEVKHALQRL-----LCSSFRESTAGSPPP-------- |
| 4OCV Chain:A ((24-378)) | -------------TNEALFDVASHFALEGTVDSIEPYGDGHIN--TTYLVTTDGPRYILQRMNTGIFPD--TVNLMRNVELVTSTLKAQGKETLDIVRTTSGDTWAEIDGGAWRVYKFIEHTMSYNLVPNPDVFREAGRAFGDFQNFLSG--FDANQLTETIAHFHDTPHRFEDFKKALAADELGRAAGCGPEIEFYLSHADQYAVVMDGLRDGSIPLRVTHNDTKLNNILMDATTGKARAIIDLDTIMPGSMLFDFGDSIRFGASTALEDERDLDKVHFSTELFRAYTEGFVGELRDSITAREAELLPFSGNLLTMECGMRFLADYLEGDVYFATKYPEHNLVRSRTQIKLVREMEQRADETRAIVADVMETT |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -306651 for 2371 contacts (-129.3/contact) +
2D Compatibility (PS) -30683 + (NN) 14085 + (LL) 1804
1D Compatibility (HY) -5200 + (ID) 2650
Total energy: -329295.0 ( -138.88 by residue)
QMean score : 0.105
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