Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------MSNEDMEQDNTTLLTEFVL-TGLTYQPEWKMP---------------LFLVFL---------VIYLITIVWN---LGLIALIWNDPQLHIPMY-----------------------------FFLG---SLAFVDAWISSTVTPKMLV----NFLAKNRMISLSECMIQFFSFAFGGTTECFLLATMAYDRYVAICKPLLYPVIMNNSLCIRLLAFSFLGGFLHALIHE-VLIFRLTFCNSNIIHHFYCD----IIPLFMISCTDP--SINFLMVFILSGSIQVFTIVTVLNSYTFALFTILKKKSVRGVRKAFSTCGAHLLSVSLYYGPLIFMYLRP---ASPQADDQDMIDSVFYTIIIPLLNPIIYSLRNKQVIDSFTKMVKRNV |
| 4NM6 Chain:A ((7-451)) | SCRCEGPFYTHLGAGPNVAAIREIMEERFGQKGKAIRIERVIYTGKEGKSSQGCPIAKWVVRRSSSEEKLLCLVRERAGHTCEAAVIVILILVWEGIPLSLADKLYSELTETLRKYGTLTNRRCALNEERTCACQGLDPETCGASFSFGCSWSMYYNGCKFARSKIPRKFKLLGDDPKEEEKLESHLQNLSTLMAPTYKKLAPDAYNNQIEYEHRAPECRLGLKEGRPFSGVTACLDFCAHAHRDLHNMQNGSTLVCTLTREDNREFGGKPEDEQLHVLPLYKVSDVDEFGSVEAQEEKKRSGAIQVLSSFRRKVRMLAEPVKTGSDEVWSDSEQSFLDPDIGGVAVAPTHGSILIECAKRELHATTPLKNPNRNHPTRISLVFYQHKSMNEPKHGLALWEA--KMAEK-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NM6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -278727 for 2230 contacts (-125.0/contact) +
2D Compatibility (PS) -32496 + (NN) 1637 + (LL) 296
1D Compatibility (HY) 2000 + (ID) 2400
Total energy: -309690.0 ( -138.87 by residue)
QMean score : 0.138
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