Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKQYSVGNQHSNYRSLLFPFLCSQMTQLTASGNQTMVTEFLFSMFPHAHRGGLLFFIPLLLIYGFILTGNLIMFIVIQVGMALHTPLYFFISVLSFLEICYTTTTIPKMLSCLISEQKSISVAGCLLQMYFFHSLGITESCVLTAMAIDRYIAICNPLRYPTIMIPKLCIQLTVGSCFCGFLLVLPEIAWISTLPFCGSNQIHQIFCDFT--------PVLSLACTDTFLVVIVDAIHAAEIVASF-----------------------LVIALSYIRIIIVILGMHSAEGHHKAFSTCAAHLAVFLLFFGSVAVMYLRFSATYSVFWDTAIAV-------TFVILAPFFNPIIYSLKNKDMKEAIGRLFHYQKRAGWAGK |
1W5C Chain:D ((1-350)) | MTIAIGRAPAERG-------WFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHG---------LASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGV-RPYNAIAFSAPIAVFVSVF------LIYPLGQSSWFFAPSF-GVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQI-----FGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPH--ENFVFPEEVLPRGN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1W5C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -244039 for 2129 contacts (-114.6/contact) +
2D Compatibility (PS) -30615 + (NN) 7400 + (LL) 2528
1D Compatibility (HY) -14400 + (ID) 2150
Total energy: -281276.0 ( -132.12 by residue)
QMean score : 0.171
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