Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------MAKNNLTRVTEF-------ILMGFMDHPKLEIPLFLVFLSF----YLVTLLGNVGM----IMLIQVDVKLYTPMYFFLSHLSLLDACYTSVITPQ--ILATLATGK-------TVISYGHCAAQFFLFTIC-------------------------AGTE------CFLLAVMAYDRYAAIRNPLLYT--VAMNPRLCWSLVVGAYVCGVSGAILRTTCTFTLSF-CKDNQINFFFCDLPPLLKLACSDTANIEIVIIFFGNFVILANASVIL-ISYLLIIKTILKVKSSGGRAKTFSTCASHITAVALFFGALIFMYLQSGSGKSLEEDKVV--SVFYTVVIPMLNPLIYSLRNKDVKDAFRK--VARRLQVSLSM- |
| 4JP0 Chain:A ((2-381)) | LDTNKVYEISNHANGLYAATYLSLDDSGVSLMNKNDDDIDDYNLKWFLFPIDDDQYIITSYAANNCKVWNVNNDKINVSTYS-STNSIQKWQIKANGSSYVIQSDNGKVLTAGTGQALGLIRLTDESSNNPNQQWNLTSVQTIQLPQKPIIDTKLKDYPKYSGNIDNGTSPQLMGWTLVPCIMVNDPNIDKNTQIKTTPYYILKKYQYWQRAVGSNVALRPH----EKKSYTYEWGTEIDQKTTIINTL--GFQINIDSGMKFDIPEVGGGTDEIKTQLNEELKIEY---SHETKIMEKYQEQSEIDNPTDQSMNSIGFLTITSLELYRYNGSEIRIMQIQTSDNDTYNVTSYPNHQQALLLLTNHSYEEVEEITNIPKSTLIKLKKH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JP0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -293864 for 2170 contacts (-135.4/contact) +
2D Compatibility (PS) -31954 + (NN) 7818 + (LL) 760
1D Compatibility (HY) 1600 + (ID) 2250
Total energy: -317890.0 ( -146.49 by residue)
QMean score : 0.142
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