Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRHSKRTHCPDWDSRESWGHESYRGSHKRKRRSHSSTQENRHCKPHHQFKESDCHYLEARSLNERDYRDRRYVDEYRNDYCEGYVPRHYHRDIESGYRIHCSKSSVRSRRSSPKRKRNRHCSSHQSRSKSHRRKRSRSIEDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGMHVAVKIVKNV--G--RYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFD-----HHGHVCIVFELLGLSTYDFIKENSFLPFQIDHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYVVKYNSKMKRDERTLKNTDIKVVDFGSATYDD-EHHSTLVSTRHYRAPEVILA-LGWSQPCDVWSIGCILIEYYLGFTVFQTHDSKEHLAMMERILGPIPQHMIQKTR---KRKYF----HHNQLDWDEHSSAGRYVRRRCKPLKEFMLCHDEEHEKLFDLVRRMLEYDPTQRITLDEALQHPFFDLLKKK |
| 4QNY Chain:A ((18-315)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------LDDRYLLERIIGAGSYGVVIRARDTKSDNRLVAMKRVNKEIFEEVILAKRILREIKLLAHFND--DN----IIGLRNILTPEDPENFDHFYIVMDIMETDLKQVLRSGQ--ELTEAHIQFFIYQALRALHIIHSAGVIHRDITPANILVN-------------------TNCDLKICDFGLAKEE-GEYMTDYVTMRWYRAPELVMEDKDYSAQIDVWGIGCILGELLGSRPLFQGKDRVNQLDKIVDVIGTPSEEDINSVGSSAAQKYLKKKSHRPQADWR-----------------QRY---PTASPEALDLLRHMLVFNPKRRITVLQAMRHPFLEQLHDD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QNY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202364 for 2180 contacts (-92.8/contact) +
2D Compatibility (PS) -29774 + (NN) -11274 + (LL) 9780
1D Compatibility (HY) -24000 + (ID) 4200
Total energy: -261832.0 ( -120.11 by residue)
QMean score : 0.467
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