Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQQEMITINAELRDVTKTKAIRSLRKKGNIPAVVYGKGHNNVNLTLSAKEFTKQYKLGFLSAHVIELDISG-KKEYALVRDIQWHVVKDTIQHVDFQFVDKGSEIKIDIPLSFVNESKSPGIKLGGVLNVLCRSITVKC-SPDKIPQAIEVDLSGKMIGQSVHISDVKLPGGVKLAAHEEENFTVVTISAADSGVEESQVETTEE
2ZJR Chain:S ((1-175))
------MELTAKPRT------PKQKLDESMIAAVAYNKEN-NVSFALDRKAFDRAFRQQ-STTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTG--RSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPE--LTVVSVLPPR-------------
General information:
TITO was launched using:
RESULT:
Template:
2ZJR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121223 for 1221 contacts (-99.3/contact) +
2D Compatibility (PS) -18423 + (NN) -1747 + (LL) 2432
1D Compatibility (HY) -12000 + (ID) 2450
Total energy: -153411.0 ( -125.64 by residue)
QMean score : 0.376
(partial model without unconserved sides chains):
PDB file :
Tito_2ZJR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZJR-query.scw
PDB file :
Tito_Scwrl_2ZJR.pdb
: