Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYKISKLILSALKANKYTKVIVLFSSIFVILFSVIYCNYSLRDNFLSSYRDSSVSLKSVLENSIIKKYHYLLIEKHHIKYKSFDYINQLVKLRAELLQSVGEVKDLGLILYDQNSRIIFSHFNTQDHDYEQLLTNDEIDKLLNNQEIFYTIGHTLISIFPIFHENDTKPSFFLKIIQNHDNFYVMVYSLFLT---FLGLLLIILILVMLYLHFSNTQMLVKQHKTNIEL-QQMKEALEQENTNKLKFFASVTHELRTPLNAIIGFAELIKNETLGSMDNY-QYKEYVDDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCLNMLSPKLKET-----GISLEKEIPNRQLLVIADPKRMKQVIINLLSNSIKFTPK------DGLIRMVIKENIEKNLLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRNEGTGIGLPLSKKLVELMGGTFNIKSEAKLGTTITLNFFYEEQTCEDLIDF |
| 1GKZ Chain:A ((38-378)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------VRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAAR---FPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYH---FTTAPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREE----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GKZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -108249 for 2312 contacts (-46.8/contact) +
2D Compatibility (PS) -31601 + (NN) -7922 + (LL) 14672
1D Compatibility (HY) -10400 + (ID) 2400
Total energy: -145900.0 ( -63.11 by residue)
QMean score : 0.363
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