Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFAVEQAKLAKKNDEIPIGAVIVSGDN-IISFAHNI---SNDPTAHAEMLVIRQACELLSTSVLCNADMYVTLEPCPMCAQAISFARIKRLYFGAYNSKGGGIENGAKIFQ--FCSHVPEVYGGVLETECSFLLKDFFEKLRDSTNYY
1WWR Chain:A ((27-170))
LKVALREAKRAFEKGEVPVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPL-EEASELLSEFFKKLRNNII--
General information:
TITO was launched using:
RESULT:
Template:
1WWR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126145 for 1160 contacts (-108.7/contact) +
2D Compatibility (PS) -15366 + (NN) -10495 + (LL) -56
1D Compatibility (HY) -12000 + (ID) 3000
Total energy: -167062.0 ( -144.02 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_1WWR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WWR-query.scw
PDB file :
Tito_Scwrl_1WWR.pdb
: