Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFTLPELPYDKTALEPYISAKTLDFHYDKHHKGYLNKLNELIENTDYQNVKIEELIMKVHGNSDEVPVFNNAAQVWNHTFYWNSMKKSGGDKPKEDGLLAKKIQDDIGGFDKFHEEFFNHGIGQFGSGWVWLV-LERGKLKITKTPNADLPLIYDQV-PLLTMDVWEHAYYLDCQNRRIDYIKIFLDHLINWDFAEENLKKNT
4L2C Chain:B ((2-192))
--FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKFENKSLEEIVRSSDGG-----VFNNAAQIWNHTFYWNSLSPNGGGAPT--GAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLVKLADGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNVRPDYLKGFWS-LVNWEFANANFA---
General information:
TITO was launched using:
RESULT:
Template:
4L2C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130155 for 1490 contacts (-87.4/contact) +
2D Compatibility (PS) -19794 + (NN) -5216 + (LL) 288
1D Compatibility (HY) -18800 + (ID) 4900
Total energy: -178577.0 ( -119.85 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_4L2C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L2C-query.scw
PDB file :
Tito_Scwrl_4L2C.pdb
: