Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSTPITVAYGDGIGPEIMEAVLSMLREAEAKI---SIDVIEIGERVYNKEWSYGISPSG-WESIERTKVLLKSPTTTSQGKGHKSLNVALRKSLGLYANIRPCTSY-HPVIENKFDRFDIVVIRENEEDVYTGIE-----------HRLTGNSYQCT---------KIITRSGSEKICRYAFNYAKRHNRKKVTCLTKDNIMKMTDGIF--------------HTAFDS-IAKEYPDIKAEHYIV------DIGMARVATEPENFDVIVTENLYGDILSDIVAQTSGSVGLAGSSNIGSEYAMFEAVHGSAPNIAGKNIANPSG-LLNAAVHMLIYIGQADVAKLVHDAWLKTLEDGIHTADLYKEKKSKQKVGTKEFAEAVIDNIGKKPGILPELIISNGVSSKISKIQGNCEQDYKVRKLVGSDITLAWDKSSNFNQIVKLFESSNPKVIAIYSKGLAIWPGDSKSLSDQVTCRFIANNEKKTITNIDVNNLLIKLERNSFDVVRMDKLYLYDEKEGFFS |
1XKD Chain:B ((43-421)) | ---------GDGVGPEVVESALKVVDAAVKKVGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETPVGTGYRSLNVAIRQALDLYANIRPVRYYGQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGISIREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMGDGIAVAEPVHGTAPKYAGKDLINPSAEILSASLLIGEFMGWREVKSIVEYAIRKAVQSKKVTQDLARHMPGVQPLRTSEYTETLIAYIDEADL----------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XKD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109509 for 2675 contacts (-40.9/contact) +
2D Compatibility (PS) -35877 + (NN) -16506 + (LL) 8592
1D Compatibility (HY) -26000 + (ID) 6000
Total energy: -185300.0 ( -69.27 by residue)
QMean score : 0.419
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