Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDVLYPVESVLKK--DKVNFVQAEVTKIDRDAKKVET---------------------NQGIYDFDILVVALGFVSETFGIEGMKDHAFQIENVITARELSRHIEDKFANYA---ASKEKDDNDLSILVGGAGFTGVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPIVACNEKGFVVEV-----DGEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGR-----IVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAKNIKRILNGESTEE------------FEYVDRGTVCSLGSHDGVGMVFGKPI-----------AGKKAAFMKKVIDTRAVFKIGG-IGLAFKKGKF----- |
| 4G9K Chain:A ((1-471)) | MKVIDPQHSDKPNVLILGSGWGAISFLKHI----DTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAF-------AGLPPTAQVAHQEAEYLAKNFDKMAQIPNFQKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRDFFKGL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4G9K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -224981 for 3255 contacts (-69.1/contact) +
2D Compatibility (PS) -41684 + (NN) -7974 + (LL) 908
1D Compatibility (HY) -22800 + (ID) 5000
Total energy: -301531.0 ( -92.64 by residue)
QMean score : 0.479
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