Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK
1KKL Chain:H ((15-99))
--QKTFKVTADSGIHARPATVLVQTASKYDADVNLEYNGKTVNLKSIMGVMSLGIAKGAEITISASGADENDALNALEETMKSERLG-
General information:
TITO was launched using:
RESULT:
Template:
1KKL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48412 for 642 contacts (-75.4/contact) +
2D Compatibility (PS) -9068 + (NN) -2437 + (LL) 376
1D Compatibility (HY) -8000 + (ID) 2600
Total energy: -70141.0 ( -109.25 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1KKL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KKL-query.scw
PDB file :
Tito_Scwrl_1KKL.pdb
: