Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLINKKNTINNYNEELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLSEE
1X08 Chain:A ((20-240))
--------------------------HVAIIMAGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE---------
General information:
TITO was launched using:
RESULT:
Template:
1X08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100430 for 1728 contacts (-58.1/contact) +
2D Compatibility (PS) -23384 + (NN) -7153 + (LL) 1608
1D Compatibility (HY) -16400 + (ID) 4600
Total energy: -150359.0 ( -87.01 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_1X08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1X08-query.scw
PDB file :
Tito_Scwrl_1X08.pdb
: