Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIV---GGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRG----LYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI |
2AGP Chain:B ((3-335)) | -----VLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGI---NKLVDTLSIEFDKLKGMIGEAKAKYLISLARD-EYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDK--RIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGV------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AGP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116500 for 2482 contacts (-46.9/contact) +
2D Compatibility (PS) -35322 + (NN) -14290 + (LL) 2252
1D Compatibility (HY) -23200 + (ID) 5850
Total energy: -192910.0 ( -77.72 by residue)
QMean score : 0.411
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