Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
2KKO Chain:A ((7-94))
-------RKAALLDQVARVGKALANGRRLQILDLLAQGERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFALVQ-----------
General information:
TITO was launched using:
RESULT:
Template:
2KKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60787 for 594 contacts (-102.3/contact) +
2D Compatibility (PS) -9033 + (NN) -2333 + (LL) 772
1D Compatibility (HY) -4400 + (ID) 1250
Total energy: -77031.0 ( -129.68 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_2KKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KKO-query.scw
PDB file :
Tito_Scwrl_2KKO.pdb
: