Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNK----KFQVAVNEEFVQKSDF----IQPNDTVALIPPVSGG
1FM0 Chain:D ((1-81))
MIKVLFFAQVRELVGTDATEVAADFP-TVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS----FDHPLTDGDEVAFFPPVTGG
General information:
TITO was launched using:
RESULT:
Template:
1FM0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36001 for 445 contacts (-80.9/contact) +
2D Compatibility (PS) -7691 + (NN) 599 + (LL) 268
1D Compatibility (HY) -6400 + (ID) 1000
Total energy: -50225.0 ( -112.87 by residue)
QMean score : 0.690
(partial model without unconserved sides chains):
PDB file :
Tito_1FM0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FM0-query.scw
PDB file :
Tito_Scwrl_1FM0.pdb
: