Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPA--ETEEQREAYLADRRYNHLDKRM--MPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDKYYL
2H4Z Chain:B ((5-232))
--KLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKALNFEFDLVFTSVLNRSIHTAWLILEELGQEWVPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGISDEDIINITLPTGVPILLELDENLRAVGPH--
General information:
TITO was launched using:
RESULT:
Template:
2H4Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86637 for 1848 contacts (-46.9/contact) +
2D Compatibility (PS) -23760 + (NN) -2190 + (LL) 336
1D Compatibility (HY) -21600 + (ID) 5300
Total energy: -139151.0 ( -75.30 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_2H4Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H4Z-query.scw
PDB file :
Tito_Scwrl_2H4Z.pdb
: