Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKQIKALALFSGGLDSLLSMKLLIDQ-GIEVTALHFNIGFGGNKDKREYFENATAQIGAK-LLVCDIREQFFNDVLFKP----KYGYGKYFNPCIDCHANMFRNAFYKMLELDADFVLSGEVLGQRPKSQRKEALNQVRKLVREVGEEARFDLILDRTQASGEKPQFLDELLLRPMSAKLLEPTFMEKKGWVDREKLLDVSGRGRARQLQMIKDYGLKYYE-KPGGGCLLTDIQVSNKIKNLKEYREMVFEDGVIVKNGRYFVLPHNARLVVARNEEENHKLDIEHPLMDKIELLGCKGPLSLVDKNASQEDKELAGRIALGYAKTLKNQAYLIQIGNEKRELYPLDKENAREYLFA |
| 1KOR Chain:A ((1-190)) | ---MKIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQG---EEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKG--NDQVRFELTAYALKP--------------------------DIKVIAPWREW----------SF-----------QGRKEMIAYAEAHGIPVP-PYSMDANLLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDMLSPKYA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KOR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -86272 for 1392 contacts (-62.0/contact) +
2D Compatibility (PS) -19537 + (NN) -4422 + (LL) 3744
1D Compatibility (HY) -2000 + (ID) 1800
Total energy: -110287.0 ( -79.23 by residue)
QMean score : 0.493
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