Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIL-FGISD---------TQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQT-EALEEEKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDY--DLLLIGASESNLLYRLFISHQNSLVEQSSIPV-VIAK------------
2GM3 Chain:A ((5-175))
PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQ---VSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLG-------TVSAFCVKHAECPVMTIKRNADETPSDPADD
General information:
TITO was launched using:
RESULT:
Template:
2GM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70747 for 905 contacts (-78.2/contact) +
2D Compatibility (PS) -13884 + (NN) -4501 + (LL) 1584
1D Compatibility (HY) -8000 + (ID) 1200
Total energy: -96748.0 ( -106.90 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_2GM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GM3-query.scw
PDB file :
Tito_Scwrl_2GM3.pdb
: