Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTFKKGVILDAKSVGLKALEVLKEVADFDFYEVTSPNQIVERSIEAEIMVL-NKVVITQEVLSQLPKLKLICITATGTDNVDIKSAKALGIEVKNVSAYSTESVAQHTLACALSLLGRINDYDRYCKSGEYSQSDIFTHISDIKMGLIKGGQWGVIGLGNIGKRVAKLAQAFGAKVVYFSPKDKKEEYERL-----SLEELLKTSGIISIHAPLNESTRDLIALKELQSLKDGAILINVGRGGIVNEKDLALILETKDLYYAS-DVFVKEPFEKDHAFLNPKIQNKLLLTPHIAWAYSDSLKTLVEKTKENIQDFLASQK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
1YGY Chain:A ((3-529)) | ----SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGT-------EIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQ----VVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICKASESPNHRSVVDVRAVGADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDLS |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1YGY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -189480 for 2425 contacts (-78.1/contact) +
2D Compatibility (PS) -32423 + (NN) -12288 + (LL) 1168
1D Compatibility (HY) -12000 + (ID) 4350
Total energy: -249373.0 ( -102.83 by residue)
QMean score : 0.620
|
|
|