Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKLEVGQLAPDFR---LKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEKKNAVVVGVSPDNSQSHQKFISQCS-------LNVILLCDEDKKVANLYKAYGKRMLYGKEHLGI-IRSTFIINTQGVLEKCFYNVKAKGHAQKVLESL
4MH2 Chain:K ((29-165))
-----VTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS---RDYGVLL----EGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRL
General information:
TITO was launched using:
RESULT:
Template:
4MH2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60495 for 891 contacts (-67.9/contact) +
2D Compatibility (PS) -13826 + (NN) -5527 + (LL) 1004
1D Compatibility (HY) -9600 + (ID) 2500
Total energy: -90944.0 ( -102.07 by residue)
QMean score : 0.651
(partial model without unconserved sides chains):
PDB file :
Tito_4MH2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MH2-query.scw
PDB file :
Tito_Scwrl_4MH2.pdb
: