Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLFSKLFAPTLKEPPKDAVLKSPKHPGKA-GYIYQ---IGSGIYNFLPLAKKVLDKIENVTHKRMQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKD-RKDNDFVLSPTLEENITEIAANFIKSYKQLPVHLYQIHTKFRDEIRP-RFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSAYKEILSDLGLD-FRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNCDYAANIEIAKRSKRTEPLMSPSALAKFPTPNTTSAPSVAEFFKTEPYFVLKALVNKVIHKDKETLACFFVRGDDNLEETKALNTLNLLGANALELREANEEDLNKAGLIAGFIGPYGLKKHVCYIIFDEDLKEGDCLIVGANEKDFHAVGVDLKGFENLVYADIVQVKESDCCPNCQGALKYHKSLEVGHIFKLGQSYAKSLKASFLDKNGKERFFEM--GCYGIGISRLLSVILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTIKDIELEEKILEMLASE |
| 1NYR Chain:A ((236-640)) | ---------------EERKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPD-QIKEEFKRVVNMIIDVYKDFGFEDYSFRLSY-RDPED--KEKYF-----DD--------------------------DDMWNK----------------------AENMLKEAADE----------------------------LGLS--------------YEEAIGEAAFYGPK-----LDVQVKT-----------------------AMGKEET-----------------LS-------------TAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEET----KGAFPTWLAPKQVQIIPVNVD--LHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NYR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124636 for 3214 contacts (-38.8/contact) +
2D Compatibility (PS) -41984 + (NN) -5200 + (LL) 11016
1D Compatibility (HY) -12000 + (ID) 3550
Total energy: -176354.0 ( -54.87 by residue)
QMean score : 0.435
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