Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQYANAYQAYQHNRVSVESPAKLIEMLYEGILRFSSQAKRCIE----NEDIEKKIYYINRVTDIFTELLNILDYEKGGKVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVARGLLEAWREIHSDELA-
1ORJ Chain:A ((1002-1127))
---RNIAEAYFQNMVETATPLEQIILLYDKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLDTIYTIILNTLVKVD--KTKEELQKILEILKDLREAWEEVKKKVHHH
General information:
TITO was launched using:
RESULT:
Template:
1ORJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63213 for 796 contacts (-79.4/contact) +
2D Compatibility (PS) -12703 + (NN) -3991 + (LL) 716
1D Compatibility (HY) -6400 + (ID) 1650
Total energy: -87241.0 ( -109.60 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_1ORJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ORJ-query.scw
PDB file :
Tito_Scwrl_1ORJ.pdb
: