Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGFLFEKSLMGFCAHSIKIIKVTGLILSFLAAFLVAEDTHEPEEIKAKVAYVKIPQLEDLENTPVYIGQTIGVTYDLLLFDAEFLEAKIKDGWDKTQIELLNKMPKWKKVEKELFRATYYYKIKGIRASIPSLEVSAFSNKDKYIDHSIAPKVALQVTDLSKNPRYANVMAKDLQVVQYKTKDYDDKNNILVMELAFKEANWEDFHVKEAIKQGFDNASLNQIKAKEGSVFYYCVLPKTLQNLSFDYFSLSNRQFKTLSFSAIPTQDTTG--IQSDLIPKNNFLVFSNVALLALCVFFLALFFIFGRKLIFLGLGILCLGFVLYNLLFTQKSALLLAHKKIRILPTQNSTILGLSRDEMPIKILGSHDDYYKILTPHEQIGWVKKDEVK |
4XLG Chain:A ((3-300)) | ---------------------EFQQIPDFYGCYLLQS----------------ISK-----RQSFYIGSTPNPVRRLRQHNGSLSRTKRDGTRPWEMVAIVYGFPS--------------------RIAALQFQH-AWQHGTRYI--SIHHKLAM-ITSLLKN-EYFRYMDLTLHFFNQKVEEIWKNDK-------FNVSNYTVSLSQDALTE-INNDTIDDIMDVNEKNMELV---QNLYSTTLAEKTKTLLLYKEKIDTGINTCQFCNKIIKHNNISENLFAFCRDTSC---------------------------------TFVSHLACAYRYFMSEDTIIPQSPKC-----------------PKCYTLLKWCDVIYYSIKLNK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XLG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25033 for 1960 contacts (-12.8/contact) +
2D Compatibility (PS) -26366 + (NN) 891 + (LL) 11680
1D Compatibility (HY) -12000 + (ID) 2350
Total energy: -53178.0 ( -27.13 by residue)
QMean score : 0.173
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