Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKTILLSALLAFSCAHALSDMDLIKKAKESQLEPMPMGKALKEYQIKKTRDVGIGAKNSEIMTSAQVELGKMLYFDPRISTSYLVSCNTCHNLGLGGVDLIPSAIGSQWKKNPHLLSSPTVYNSVFNDVQFWDGRVTHLNEQAQGPIQSSFEMGADPKVVVEKINSIPGYVKLFRKAYGSK-VKIDFKLIADSIAMFEATLITP-SRYDDFLRGNPKALSKAEKEGLDLFISKGCVACHNGINLGGT-MQPFGVVKPYKFANVGDF----KGDKNGLVKVPTLRNITETMPYFHNGQFWDVKDAIKEMGSIQLGIEISDAEAKKIETFFEALKGKKPKIIYPELPVMTDKTPKPSF |
1NML Chain:A ((22-322)) | ----------------------------------------------------------DGNELTQAKVELGKMEFFEPRLSSSHLISCNTCHNVGLGGDDELPTSIGHGWQKGP--RNSPTVFNAVFNAAQFWDGRAADLAEQAKGPVQAGVEMSSTPDRVVATLKSMPEYIERFEDAFPGQENPVTFDNMAVAIEAYEATLITPEAPFDKYLRGDTSALNESEKEGLALFMDRGCTACHSGVNLGGQNYYPFGLVAK-----KGRFSVTETASDEYVFRASPLRNIELTAPYFHSGAVWSLEEAVAVMGTAQLGTELNNDEVKSIVAFLKTLTGNVPEVTYPVLPPSTANTPKPVD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NML.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66899 for 2243 contacts (-29.8/contact) +
2D Compatibility (PS) -30218 + (NN) -13086 + (LL) 5412
1D Compatibility (HY) -22400 + (ID) 6800
Total energy: -133991.0 ( -59.74 by residue)
QMean score : 0.446
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