Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFK---GYFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKP----VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLELV
3GA6 Chain:B ((4-252))
LKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPSSLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGKMSEERLKYKLEF---YDAFLEDVNRERDSGRNVIICGNFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQ-YTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIE
General information:
TITO was launched using:
RESULT:
Template:
3GA6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120404 for 1971 contacts (-61.1/contact) +
2D Compatibility (PS) -26442 + (NN) -15160 + (LL) 544
1D Compatibility (HY) -24000 + (ID) 5100
Total energy: -190562.0 ( -96.68 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_3GA6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GA6-query.scw
PDB file :
Tito_Scwrl_3GA6.pdb
: