Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LVQSINTKVDLTIDATAYTGLTDYGKIMIGDKGFEFFNSRDVRKFVQIPWEEVDQVIVSVMLKGKWIPRYAIKTKRNGTYTFASKRPKEVLRKIRVYVDPANMVSSLSFFDVMKRSFRSIFSKKKNKNK
1PFJ Chain:A ((1-108))
-MATSSEEVLLIVKKVRQK--KQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNEST------------------AVKERDAVKDLLQQLLPKFKRKAN
General information:
TITO was launched using:
RESULT:
Template:
1PFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36881 for 740 contacts (-49.8/contact) +
2D Compatibility (PS) -11117 + (NN) -212 + (LL) 1880
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -49780.0 ( -67.27 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1PFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PFJ-query.scw
PDB file :
Tito_Scwrl_1PFJ.pdb
: