Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTMENSSNVAQSSKWKLPIMIAGFVIVVALVFYFVFEGTKNDITIVNAGEKIESRTHAKTVSEALDEAGIKVSERDEIAPGKNAEIKDGMEIKYLPARQITINDNGTKKDVWSTKANVADLLKDENITTRPQDVLNVALDTKLKNGLEVNINRAIQLSLQNGAKKDTVWTTKTKVSDLLAEKNIKLDQDDRVSPAKDSNLKEKMTVEVTYVNSKAEKKNEQVKFETVYKEDDSLNKGVEKVVQEGKNGKKVVEYKVTFENGKEKKRDVIKENVTSNKTDKVVVRGTKEKVVATPVSNVSTSSATSSSSSSASSTPSGGKTYKMESTAYSGGGTTAYGINLSANPGLKVIAVDPRIIPLGSKVWVEG------------YGEAIAGDTGGAIKGN-IVDVYFPNESQCYSWGRRMVTVKVLN------------ |
| 2PNW Chain:A ((7-371)) | FSIDEVS-FRDLPGWGQ--------------------------------------DDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNSVPFRISPSGFVTAFYEPELEVSATPDDVWRYPIY-RRPPELVDIDNDNRPDGFDPSYAFGKADEEGISYFPDRRAID----EGCLRGRGLEIAWARSKVDLFFVHVQGAARLVFPDG---AIKRITYAAKAGHVFSPIGRLLLD-----RGELDPKTISMQTIRQWLADHPDEVDGVLWHNRSYIFFREAGPIAA------------------------AKVPLVAG---RALAVDRLIHTFGLPFFIHAPTLTHLDDGKPFARLMLALDTGSAIVGPARGDIFTGSGFEAGELAGTVRNEADFYILLPRIAAERYR |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PNW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 114304 for 2595 contacts (44.0/contact) +
2D Compatibility (PS) -34135 + (NN) 670 + (LL) 3832
1D Compatibility (HY) -6000 + (ID) 2100
Total energy: 76571.0 ( 29.51 by residue)
QMean score : 0.084
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