Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKNISDIIEAYLKQVLESSEAVEIK-----RSEIA-DKFECVPS--QINYVINTRFTMERGYIVESKRGGGGYIRIIKVKMND-KLQLLEA------IISMVHDKK-VSQSFSEDVIL------------R-LLEE-----E-VITKKEARLMVAALD--REVLILPLPDRDILRSRILEAMLVALKYD
3B85 Chain:A ((4-208))
VIRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGDP-YLRPLHDALRDMVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRLGFGSKMVVTGDGLRLVRHILRGVDDVHFSELTSSDVVRHQLVGHIVDAYE--
General information:
TITO was launched using:
RESULT:
Template:
3B85.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29066 for 905 contacts (-32.1/contact) +
2D Compatibility (PS) -16325 + (NN) -3925 + (LL) -156
1D Compatibility (HY) -8000 + (ID) 1250
Total energy: -58722.0 ( -64.89 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_3B85.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3B85-query.scw
PDB file :
Tito_Scwrl_3B85.pdb
: