Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQYKIKEMPLEELEPKVVEGLLEHKERL----GY-N---IPKKDTEYIGFAALSEVGEMVGGVTAKIS-YGELHVSLLSVDPSTQGSGVGTELMAQIERYGRANSCHHISLTT----FSYQAPEFYRKCGFTELGRVKDFPIKGEEKYFFIKYL
1YX0 Chain:A ((1-148))
MHIKIDDLTGRQVVSLVNEHLHSMTLMSPPESIHALGLEKLRGPE-ITFWSA-WEGDELAGCGALKELDTRHGEIKSMRTSASHLRKGVAKQVLQHIIEEAEKRGYERLSLETGSMASFEPARKLYESFGFQYCEPFADYGEDPNSVFMT----
General information:
TITO was launched using:
RESULT:
Template:
1YX0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42406 for 891 contacts (-47.6/contact) +
2D Compatibility (PS) -14628 + (NN) -2010 + (LL) 816
1D Compatibility (HY) -3200 + (ID) 1150
Total energy: -62578.0 ( -70.23 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_1YX0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YX0-query.scw
PDB file :
Tito_Scwrl_1YX0.pdb
: