Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------LIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFE--ENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVG---WFPVKRTSDKLLFF----------PKSLNVFHWHQDTF-ALPTGSTRLFASEGCLNQAFLY--GENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
1GPM Chain:A ((3-229))
ENIHKHRILILDF----GSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSP---RAPQYVF-EA---GVPVFGVCYGMQTMAMQLGGHVEASNEREF-GYAQVEVVN--DSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVAST-ESCPFAIMANEEKRFYGVQFHPEVT-H------------------------------TRQGMRMLERFVRDICQCEAL
General information:
TITO was launched using:
RESULT:
Template:
1GPM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129421 for 1511 contacts (-85.7/contact) +
2D Compatibility (PS) -19025 + (NN) -3311 + (LL) 3748
1D Compatibility (HY) -11600 + (ID) 2100
Total energy: -161709.0 ( -107.02 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_1GPM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GPM-query.scw
PDB file :
Tito_Scwrl_1GPM.pdb
: