Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNIMLVCSAGMSTSLLVKKMTEAIEKQQVDATVI---AVAEADFDKYKGNVDVVLLAPQVRFLEKNLKRVLDP-LGIPVAIINGIDYGTMDG---EKVLNDALAMIEK---------------------------
1M2E Chain:A ((1-135))
MLSQIAICIW-VESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAANPSFRAVVQQLCFEGVVVPAIVVGDRDSEDPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEFLRLAPVETMA
General information:
TITO was launched using:
RESULT:
Template:
1M2E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85644 for 715 contacts (-119.8/contact) +
2D Compatibility (PS) -11567 + (NN) -7615 + (LL) -172
1D Compatibility (HY) -6400 + (ID) 550
Total energy: -111948.0 ( -156.57 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1M2E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2E-query.scw
PDB file :
Tito_Scwrl_1M2E.pdb
: