Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIIGIAACTSGIAHTYI-AKEKLTKAGLALGHNVHIETQGTIGIEDELSAEQVKNADVVIIAADIKISGK-DRFKGKRVVEIPTDLAIKAPKQIINKI-DKEINN-
2R4Q Chain:A ((170-273))
AKILAVTACPTG---HTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADKQV--EMERFKGKRVLQVPVTAGIRRPQELIEKAMNQDAPIY
General information:
TITO was launched using:
RESULT:
Template:
2R4Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21832 for 771 contacts (-28.3/contact) +
2D Compatibility (PS) -10552 + (NN) -3202 + (LL) 192
1D Compatibility (HY) -2400 + (ID) 1100
Total energy: -38894.0 ( -50.45 by residue)
QMean score : 0.363
(partial model without unconserved sides chains):
PDB file :
Tito_2R4Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R4Q-query.scw
PDB file :
Tito_Scwrl_2R4Q.pdb
: