Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVTHS-------KNG---YYDGLIFHRVIPEFMIQGGD-PDGRGTGGESIWGESFEDEFSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANL--PTGMQDKPVNDVVIEKINIK
4JJM Chain:B ((21-166))
-----------------------GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAK---------------------------TEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV-----------
General information:
TITO was launched using:
RESULT:
Template:
4JJM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49648 for 978 contacts (-50.8/contact) +
2D Compatibility (PS) -14218 + (NN) -8554 + (LL) 4560
1D Compatibility (HY) -10000 + (ID) 3700
Total energy: -81560.0 ( -83.39 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_4JJM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JJM-query.scw
PDB file :
Tito_Scwrl_4JJM.pdb
: