Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLQETIGIEIVSVEKGKAVVQLE--VTEKVHQPFGYLHGGVSVVLAEHAASIGAAKSIEPDEIVFGLEINANHLASKQAGLVTATAEAIHIGKSTQVWEIKITDETEKLLCISRCTIAVKKKRK
4K4C Chain:D ((24-135))
--------LGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAV-----
General information:
TITO was launched using:
RESULT:
Template:
4K4C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62320 for 799 contacts (-78.0/contact) +
2D Compatibility (PS) -11301 + (NN) 2268 + (LL) 876
1D Compatibility (HY) -4400 + (ID) 2000
Total energy: -76877.0 ( -96.22 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_4K4C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K4C-query.scw
PDB file :
Tito_Scwrl_4K4C.pdb
: