Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --------MSKPKIVILGAGYGGLKTLRKLQQRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEKLMYPLDKVVNDTK--TTFIQDTVVKINKDEKTVTL--------------------DANGDISYDYLLIALGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWK-----TDPRDELLTIIVGGAGFTGIEFLGELTNRIPE-LVKQYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVLEDRGVEFHVGKPVKEATADGVKYAES----ENEVREIKAATIIWAAGVRGNSVIEA-----SGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNLAKLVKGET-----------DLQDFVYHEKGTVCSLGDNDAIGVVFG-----------KNLKGYPASVMKKVIDDRALLLIGGSGVLASKGKFKFYK-- |
4G9K Chain:A ((1-471)) | MKVIDPQHSDKPNVLILGSGWGAISFLKHIDTKKY--NVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAF-------AGLPPTAQVAHQEAEYLAKNFDKMAQIPNFQKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRDFFKGL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4G9K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -251170 for 3304 contacts (-76.0/contact) +
2D Compatibility (PS) -42611 + (NN) -13639 + (LL) 424
1D Compatibility (HY) -26400 + (ID) 5550
Total energy: -338946.0 ( -102.59 by residue)
QMean score : 0.471
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