Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHN-----INGEQEIKDVFVDVEKILASF
1AKE Chain:A ((1-213))
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQA----DAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL---
General information:
TITO was launched using:
RESULT:
Template:
1AKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44701 for 1621 contacts (-27.6/contact) +
2D Compatibility (PS) -22738 + (NN) -13177 + (LL) 752
1D Compatibility (HY) -16400 + (ID) 4950
Total energy: -101214.0 ( -62.44 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1AKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AKE-query.scw
PDB file :
Tito_Scwrl_1AKE.pdb
: