Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VEIKQIKAKDTQDIRHRVLRPEQ---------PEENA---IYPND-DMEGTFHLGAFEKDVLLGVASFYPEKSTVIMNPAQYRIRGVATERRMRLKGLGTALLAEGEAEIWTRGADIIWCNA---RIVAVGFYEKHGYRKVGKSFVIPGIGEHYLMKKVNPNKKVDQDN
1Z4E Chain:A ((5-148))
VTIREATEGDLEQMVHMLADDVLGRKRERYEKPLPVSYVRAFKEIKKDKNNELIVACNGEEIVGMLQVTFTPYLTYQGSWRATIEGVRTHSAARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQRPDALRFYEQLGFKASHEG-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1Z4E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32120 for 847 contacts (-37.9/contact) +
2D Compatibility (PS) -13202 + (NN) 1340 + (LL) 1100
1D Compatibility (HY) -2400 + (ID) 1200
Total energy: -46482.0 ( -54.88 by residue)
QMean score : 0.267
(partial model without unconserved sides chains):
PDB file :
Tito_1Z4E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z4E-query.scw
PDB file :
Tito_Scwrl_1Z4E.pdb
: