Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSELFQNILDDAESLIRELMEIPDNYKVLFLQGGASLQFDMVPMNLANGKKAAYVNTGSWAKKAISEAKKIQGVEVEVIASSEDRNFS-YIPEIPTVSSDVAYLHVTTNNTIEGTAMFDVPDSAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQVE--GLPSMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYDYIDQS-DFFSSPVEPSARSLTNVPFVTNSA-EFDKAFVKEAEANGFENLKGHRSVGGMRASLYNAFPIEGVEALIAFMEKFANARKGGEVRV |
| 3M5U Chain:A ((4-360)) | -MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLALNGVCEYANTGVWTKKAIKEAQILGVNVK-TV-ASS-EESNFDHIPRVEFSDNADYAYICSNNTIYGTQYQNYPKTKTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGKY------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M5U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -179807 for 2996 contacts (-60.0/contact) +
2D Compatibility (PS) -39107 + (NN) -23857 + (LL) 672
1D Compatibility (HY) -29600 + (ID) 7350
Total energy: -279049.0 ( -93.14 by residue)
QMean score : 0.501
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