Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKMIVGLGNPGSKYNDTKHNIGFMAVDRIVKDLDVNFTEDKNFKAEIGSDFINGEKIYFIKPTTFMNNSGIAVKALLTYYNISIKDMIIIYDDLDMEVGKIRFRQKGSAGGHNGIKSIIAHLGT-QEFDRIKVGIGRPNGRMTVINHVLGKFDKNDEIMILNTLDKVDNAVNYYLQTNDFQKTMQKYNGLK
2PTH Chain:A ((1-190))
TIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTD-GLTKATNRLHAFK
General information:
TITO was launched using:
RESULT:
Template:
2PTH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109081 for 1562 contacts (-69.8/contact) +
2D Compatibility (PS) -19974 + (NN) -5868 + (LL) -80
1D Compatibility (HY) -11200 + (ID) 3100
Total energy: -149303.0 ( -95.58 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_2PTH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PTH-query.scw
PDB file :
Tito_Scwrl_2PTH.pdb
: