Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNK--DKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATL-YASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATN-MLGYYVNNQYDSMFQTQ-VDTISGMHWDMKKRQISPQAAGKMMEAIYYQNG--DIVNYLSKT-DFDNTRIP-KNIPV--KVAHKIGDAYDYKHD-AAIVYAEQPFIMIIFTDKSSYDDITKIADDVYQVLK---------- |
| 3CJM Chain:A ((28-282)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SANTVFFDKINDLLVASVKEFEGTVGISYLDLETGEQRSVNGQHEFYTASTIKVPLTMLVADTVAS-GQKKWTDLIPYNAEEDY------EEGTGIIAYNIQ-PEYPLKTLQEYAITYSDNIAKNMLYDTLGG---DAKAKREMYQRYLHKTPSIEEPQFSSEDALVILQKLYTEKATKPDYQAIYDSMKQSVFHERMETPTTQGKVAHKIGSYDEFIHDMGIL-ETPHPFALAIFTKGPDNAKSAAFIASVTDKLWQLQVSEYPNQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CJM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48453 for 1891 contacts (-25.6/contact) +
2D Compatibility (PS) -24685 + (NN) -7009 + (LL) 13604
1D Compatibility (HY) -6000 + (ID) 2300
Total energy: -74843.0 ( -39.58 by residue)
QMean score : 0.429
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