Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLEKRFNKYLDRIEVSLIRQFDQSISDIPGMVKLTLGEPDFTTPDHVKEAAKSAIDANQSYYTGMSGLLALRQAAADFAKDKYNLTYNPDCEILVTIGATEALSASLIAILEAGDVVLLPAPAYPGYEPIVNLVGAD--IVEIDTRENDFRLTPEMLETAIIQQGEKLKAVLLNYPTNPTGITYSRQEIASLAEVLKKYDIFVISDEVYSELTYTGQQHVSIAEYLPNQTILINGLSKSHAMTGWRVGLVYAPEAFIAQIIKSHQYMVTAASTISQFAGVEALSVGKNDTL--PMRQGYIKRRDYIIDKMSKLGFKIIKPSGAFYIFAKIPDSYPQDSFKFCQDFAYQQAVAIIPGVAFGKYGE----GYIRLSYAASMEVIETAMARLKVFMESYEG |
| 1V2F Chain:B ((26-364)) | ------------------------------GAVNLGQGFPSNPPPPFLLEAVRRAL-GRQDQYAPPAGLPALREALAE------EFAVEPES-VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP---RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDEL-YYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPG---WDAFRLVE----EARVALIPASAF--YLEDPPKDLFRFAFCKTEEELHLALERLGRV------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V2F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -258399 for 2831 contacts (-91.3/contact) +
2D Compatibility (PS) -36123 + (NN) -15891 + (LL) 3828
1D Compatibility (HY) -22000 + (ID) 5600
Total energy: -334185.0 ( -118.04 by residue)
QMean score : 0.537
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