Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDTMILNDNHKIPTLGLGTWM---INNDRVAQVVKDAIELGYRHINTAQAYNNEKGVGVGIK----ESGITRESLFVTTKIAAEHKNYESATKSIDQSLEALGLDCIDLMIIHSP---QPWKEWRETDKHFDQGNL
4WDW Chain:B ((10-134))
------LNDGHFMPVLGFGTYAPPEVPRSKALEVTKLAIEAGFRHIDSAHLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKPG--LSPTDENGKVIFD
General information:
TITO was launched using:
RESULT:
Template:
4WDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34906 for 739 contacts (-47.2/contact) +
2D Compatibility (PS) -11724 + (NN) -69 + (LL) 816
1D Compatibility (HY) -8800 + (ID) 2250
Total energy: -56933.0 ( -77.04 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_4WDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WDW-query.scw
PDB file :
Tito_Scwrl_4WDW.pdb
: