Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MVKDRQIQKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLFHHLFKQGRDV---------TFEEYLVHILKHFEQNQDSIATLL---------LSDDPYFLLRFRSELEHDVYPRLREEYITKVDIPEDFLKQFLLSSFIETLKWWLHQRQKMTVEDLLKYYLTMVER
2PBX Chain:A ((5-200))
IEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFLTDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDVDNMASLFHGIFYSIFLQVNRLGEQEAVYKLADSYLNMLCI
General information:
TITO was launched using:
RESULT:
Template:
2PBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97425 for 1224 contacts (-79.6/contact) +
2D Compatibility (PS) -18145 + (NN) -7327 + (LL) 0
1D Compatibility (HY) -7200 + (ID) 1050
Total energy: -131147.0 ( -107.15 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_2PBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PBX-query.scw
PDB file :
Tito_Scwrl_2PBX.pdb
: